ydjH [2019-06-24 08:10:32]

unknown

locus: BSU06200

pI: 5.93

mw: 28.01 kDa

protein length: 254 aa

gene length: 765 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 673,019 673,783

The protein

Protein family

• UPF0603 family (according to Swiss-Prot)

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|3B6F4FBB19401069E827EAF5835DD15AAA3C3487|pspA]-[gene|F93381205C61665820D034A384BD60410AAE84C1|ydjG]-[gene|938B55332DFB2B465D0D5AD530550CED5AC30A92|ydjH]-[gene|CA4EF8385EAA4BBC47FF0D998C820D9F36F5F94D|ydjI]
  description: [Pubmed|11454200]

  sigma factors

  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|11454200], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]

  regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|18840696,20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

  regulation

  • induced by alkaline shock ([protein|search|SigW]) [Pubmed|11454200]

Biological materials

Mutant

• MGNA-C215 (ydjH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2213 NBRP B. subtilis, Japan]
• BKE06200 ([gene|938B55332DFB2B465D0D5AD530550CED5AC30A92|ydjH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CGCTTTCCCAAAAAATCCAC, downstream forward: _UP4_TAAATGTAAGAAATAGAGAA
• BKK06200 ([gene|938B55332DFB2B465D0D5AD530550CED5AC30A92|ydjH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CGCTTTCCCAAAAAATCCAC, downstream forward: _UP4_TAAATGTAAGAAATAGAGAA

References

• 11454200,18840696